Human SNP ID | rs6470764 |
---|---|
Human chromosome | chr8 |
Human SNP position | 129713419 |
Pig chromosome | chr4 |
Pig SNP position | 11067159 |
PubMed ID | 20881960 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20881960 |
Study | Hundreds of variants clustered in genomic loci and biological pathways affect human height. |
Disease/Trait | Height |
Initial sample | 133,653 European ancestry individuals |
Replication sample | 50,074 European ancestry individuals |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 129713419 |
Reported gene | GSDMC |
Mapped gene | GSDMC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56169 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6470764-T |
SNPs | rs6470764 |
Merged | 0 |
SNP id current | 6470764 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 2E-28 |
Pvalue mlog | 27.698970004336 |
P value text | |
Or beta | 0.05 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [2834208] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000817 |
PubMed ID | 25281659 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25281659 |
Study | A novel common variant in DCST2 is associated with length in early life and height in adulthood. |
Disease/Trait | Infant length |
Initial sample | 28,238 European ancestry individuals |
Replication sample | NA |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 129713419 |
Reported gene | GSDMC |
Mapped gene | GSDMC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56169 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6470764-T |
SNPs | rs6470764 |
Merged | 0 |
SNP id current | 6470764 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.203 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.054 |
%95 Ci | [0.032-0.076] unit decrease |
Platform | Affymetrix, Illumina [2193675] (imputed) |
CNV | N |
Mapped trait | infant body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006785 |
Study accession | GCST002646 |