SNP Detail For rs6470764
1.Mapping Information
Human SNP ID rs6470764
Human chromosome chr8
Human SNP position 129713419
Pig chromosome chr4
Pig SNP position 11067159
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region8q24.21
Chromosome idchr8
Chromosome position129713419
Reported geneGSDMC
Mapped geneGSDMC
Upstream gene id
Downstream gene id
SNP gene ids56169
Upstream gene distance
Downstream gene distance
SNP risk allelers6470764-T
SNPsrs6470764
Merged0
SNP id current6470764
Contextintergenic_variant
Intergenic0
Allele frequency0.2
P value2E-28
Pvalue mlog27.698970004336
P value text
Or beta0.05
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID25281659
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25281659
StudyA novel common variant in DCST2 is associated with length in early life and height in adulthood.
Disease/TraitInfant length
Initial sample28,238 European ancestry individuals
Replication sampleNA
Region8q24.21
Chromosome idchr8
Chromosome position129713419
Reported geneGSDMC
Mapped geneGSDMC
Upstream gene id
Downstream gene id
SNP gene ids56169
Upstream gene distance
Downstream gene distance
SNP risk allelers6470764-T
SNPsrs6470764
Merged0
SNP id current6470764
Contextintergenic_variant
Intergenic0
Allele frequency0.203
P value0.000001
Pvalue mlog6
P value text
Or beta0.054
%95 Ci[0.032-0.076] unit decrease
PlatformAffymetrix, Illumina [2193675] (imputed)
CNVN
Mapped traitinfant body height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006785
Study accessionGCST002646