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SNP Detail For rs6466479
1.Mapping Information
| Human SNP ID | rs6466479 |
|---|---|
| Human chromosome | chr7 |
| Human SNP position | 114101050 |
| Pig chromosome | chr18 |
| Pig SNP position | 34328569 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7q31.1 |
| Chromosome id | chr7 |
| Chromosome position | 114101050 |
| Reported gene | NR |
| Mapped gene | FOXP2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 93986 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6466479-G |
| SNPs | rs6466479 |
| Merged | 0 |
| SNP id current | 6466479 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.122643248331108 |
| P value | 0.0000005 |
| Pvalue mlog | 6.30102999566398 |
| P value text | (IGP17) |
| Or beta | 0.2414 |
| %95 Ci | [0.15-0.34] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7q31.1 |
| Chromosome id | chr7 |
| Chromosome position | 114101050 |
| Reported gene | NR |
| Mapped gene | FOXP2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 93986 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6466479-G |
| SNPs | rs6466479 |
| Merged | 0 |
| SNP id current | 6466479 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.12247588824577 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (IGP26) |
| Or beta | 0.23 |
| %95 Ci | [0.14-0.32] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7q31.1 |
| Chromosome id | chr7 |
| Chromosome position | 114101050 |
| Reported gene | NR |
| Mapped gene | FOXP2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 93986 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6466479-G |
| SNPs | rs6466479 |
| Merged | 0 |
| SNP id current | 6466479 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.122476576224399 |
| P value | 0.000003 |
| Pvalue mlog | 5.52287874528033 |
| P value text | (IGP3) |
| Or beta | 0.2229 |
| %95 Ci | [0.13-0.32] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7q31.1 |
| Chromosome id | chr7 |
| Chromosome position | 114101050 |
| Reported gene | NR |
| Mapped gene | FOXP2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 93986 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6466479-G |
| SNPs | rs6466479 |
| Merged | 0 |
| SNP id current | 6466479 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.122643248331108 |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | (IGP43) |
| Or beta | 0.2172 |
| %95 Ci | [0.12-0.31] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7q31.1 |
| Chromosome id | chr7 |
| Chromosome position | 114101050 |
| Reported gene | NR |
| Mapped gene | FOXP2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 93986 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6466479-G |
| SNPs | rs6466479 |
| Merged | 0 |
| SNP id current | 6466479 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.122643248331108 |
| P value | 0.000004 |
| Pvalue mlog | 5.39794000867203 |
| P value text | (IGP53) |
| Or beta | 0.2224 |
| %95 Ci | [0.13-0.32] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7q31.1 |
| Chromosome id | chr7 |
| Chromosome position | 114101050 |
| Reported gene | NR |
| Mapped gene | FOXP2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 93986 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6466479-G |
| SNPs | rs6466479 |
| Merged | 0 |
| SNP id current | 6466479 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.122643248331108 |
| P value | 0.000007 |
| Pvalue mlog | 5.15490195998574 |
| P value text | (IGP54) |
| Or beta | 0.2166 |
| %95 Ci | [0.12-0.31] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7q31.1 |
| Chromosome id | chr7 |
| Chromosome position | 114101050 |
| Reported gene | NR |
| Mapped gene | FOXP2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 93986 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6466479-G |
| SNPs | rs6466479 |
| Merged | 0 |
| SNP id current | 6466479 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.122643248331108 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (IGP57) |
| Or beta | 0.2271 |
| %95 Ci | [0.13-0.32] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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