Human SNP ID | rs6463843 |
---|---|
Human chromosome | chr7 |
Human SNP position | 8799087 |
Pig chromosome | chr9 |
Pig SNP position | 86651832 |
PubMed ID | 20100581 |
---|---|
Journal | Neuroimage |
Link | www.ncbi.nlm.nih.gov/pubmed/20100581 |
Study | Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort. |
Disease/Trait | Brain imaging |
Initial sample | 175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls |
Replication sample | NA |
Region | 7p21.3 |
Chromosome id | chr7 |
Chromosome position | 8799087 |
Reported gene | NXPH1 |
Mapped gene | NXPH1 - RPL9P19 |
Upstream gene id | 30010 |
Downstream gene id | 100129634 |
SNP gene ids | |
Upstream gene distance | 46124 |
Downstream gene distance | 139684 |
SNP risk allele | rs6463843-? |
SNPs | rs6463843 |
Merged | |
SNP id current | 6463843 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | |
Pvalue mlog | |
P value text | <1 x 10-6 (multiple phenotypes) |
Or beta | |
%95 Ci | |
Platform | Illumina [530992] |
CNV | N |
Mapped trait | neuroimaging measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004346 |
Study accession | GCST000573 |