SNP Detail For rs6463843
1.Mapping Information
Human SNP ID rs6463843
Human chromosome chr7
Human SNP position 8799087
Pig chromosome chr9
Pig SNP position 86651832
2.Annotation Information
PubMed ID20100581
JournalNeuroimage
Linkwww.ncbi.nlm.nih.gov/pubmed/20100581
StudyWhole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.
Disease/TraitBrain imaging
Initial sample175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls
Replication sampleNA
Region7p21.3
Chromosome idchr7
Chromosome position8799087
Reported geneNXPH1
Mapped geneNXPH1 - RPL9P19
Upstream gene id30010
Downstream gene id100129634
SNP gene ids
Upstream gene distance46124
Downstream gene distance139684
SNP risk allelers6463843-?
SNPsrs6463843
Merged
SNP id current6463843
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value
Pvalue mlog
P value text<1 x 10-6 (multiple phenotypes)
Or beta
%95 Ci
PlatformIllumina [530992]
CNVN
Mapped traitneuroimaging measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004346
Study accessionGCST000573