SNP Detail For rs6458016
1.Mapping Information
Human SNP ID rs6458016
Human chromosome chr6
Human SNP position 37730827
Pig chromosome chr7
Pig SNP position 38202340
2.Annotation Information
PubMed ID25865494
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25865494
StudyGenome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.
Disease/TraitSitting height ratio
Initial sample3,545 African Americans individuals, 12,965 European ancestry women, 8,625 European ancestry men
Replication sampleNA
Region6p21.2
Chromosome idchr6
Chromosome position37730827
Reported geneNR
Mapped geneMDGA1 - ZFAND3
Upstream gene id266727
Downstream gene id60685
SNP gene ids
Upstream gene distance32837
Downstream gene distance88669
SNP risk allelers6458016-T
SNPsrs6458016
Merged0
SNP id current6458016
Contextintergenic_variant
Intergenic1
Allele frequency0.792
P value0.0000003
Pvalue mlog6.52287874528033
P value text(EA)
Or beta0.062
%95 Ci[0.038-0.086] unit increase
PlatformAffymetrix, Illumina [up to 10250422] (imputed)
CNVN
Mapped traitsitting height ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007118
Study accessionGCST002843