SNP Detail For rs6452790
1.Mapping Information
Human SNP ID rs6452790
Human chromosome chr5
Human SNP position 88460891
Pig chromosome chr2
Pig SNP position 98513186
2.Annotation Information
PubMed ID25644384
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25644384
StudyGenetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49).
Disease/TraitCognitive function
Initial sample51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals
Replication sampleNA
Region5q14.3
Chromosome idchr5
Chromosome position88460891
Reported geneTMEM161B_AS1
Mapped geneLOC102546226 - LINC00461
Upstream gene id102546226
Downstream gene id645323
SNP gene ids
Upstream gene distance21801
Downstream gene distance79888
SNP risk allelers6452790-?
SNPsrs6452790
Merged0
SNP id current6452790
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.0314
%95 Ci[0.019-0.044] unit increase
PlatformAffymetrix, Illumina [2478500] (imputed)
CNVN
Mapped traitcognition
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003925
Study accessionGCST002774