Human SNP ID | rs6452790 |
---|---|
Human chromosome | chr5 |
Human SNP position | 88460891 |
Pig chromosome | chr2 |
Pig SNP position | 98513186 |
PubMed ID | 25644384 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25644384 |
Study | Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49). |
Disease/Trait | Cognitive function |
Initial sample | 51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals |
Replication sample | NA |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 88460891 |
Reported gene | TMEM161B_AS1 |
Mapped gene | LOC102546226 - LINC00461 |
Upstream gene id | 102546226 |
Downstream gene id | 645323 |
SNP gene ids | |
Upstream gene distance | 21801 |
Downstream gene distance | 79888 |
SNP risk allele | rs6452790-? |
SNPs | rs6452790 |
Merged | 0 |
SNP id current | 6452790 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.0314 |
%95 Ci | [0.019-0.044] unit increase |
Platform | Affymetrix, Illumina [2478500] (imputed) |
CNV | N |
Mapped trait | cognition |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003925 |
Study accession | GCST002774 |