SNP Detail For rs6451493
1.Mapping Information
Human SNP ID rs6451493
Human chromosome chr5
Human SNP position 40410833
Pig chromosome chr16
Pig SNP position 26717644
2.Annotation Information
PubMed ID21297633
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21297633
StudyMeta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
Disease/TraitUlcerative colitis
Initial sample6,687 European ancestry cases, 19,718 European ancestry controls
Replication sample9,628 European ancestry cases, 12,917 European ancestry controls
Region5p13.1
Chromosome idchr5
Chromosome position40410833
Reported genePTGER4
Mapped geneLOC105374736 - LOC105374737
Upstream gene id105374736
Downstream gene id105374737
SNP gene ids
Upstream gene distance64278
Downstream gene distance189047
SNP risk allelers6451493-T
SNPsrs6451493
Merged0
SNP id current6451493
Contextupstream_gene_variant
Intergenic1
Allele frequency0.61
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.08
%95 Ci[1.04-1.12]
PlatformAffymetrix, Illumina [~ 1100000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000964