Human SNP ID | rs6451493 |
---|---|
Human chromosome | chr5 |
Human SNP position | 40410833 |
Pig chromosome | chr16 |
Pig SNP position | 26717644 |
PubMed ID | 21297633 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21297633 |
Study | Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. |
Disease/Trait | Ulcerative colitis |
Initial sample | 6,687 European ancestry cases, 19,718 European ancestry controls |
Replication sample | 9,628 European ancestry cases, 12,917 European ancestry controls |
Region | 5p13.1 |
Chromosome id | chr5 |
Chromosome position | 40410833 |
Reported gene | PTGER4 |
Mapped gene | LOC105374736 - LOC105374737 |
Upstream gene id | 105374736 |
Downstream gene id | 105374737 |
SNP gene ids | |
Upstream gene distance | 64278 |
Downstream gene distance | 189047 |
SNP risk allele | rs6451493-T |
SNPs | rs6451493 |
Merged | 0 |
SNP id current | 6451493 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.61 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.04-1.12] |
Platform | Affymetrix, Illumina [~ 1100000] (imputed) |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000964 |