Human SNP ID | rs6448432 |
---|---|
Human chromosome | chr4 |
Human SNP position | 26097188 |
Pig chromosome | chr8 |
Pig SNP position | 20243165 |
PubMed ID | 24449572 |
---|---|
Journal | Arthritis Rheumatol |
Link | www.ncbi.nlm.nih.gov/pubmed/24449572 |
Study | Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 3,034 European ancestry cases, 5,271 European ancestry controls |
Replication sample | 4,726 European ancestry cases, 2,625 European ancestry controls |
Region | 4p15.2 |
Chromosome id | chr4 |
Chromosome position | 26097188 |
Reported gene | RBPJ |
Mapped gene | LOC105374540 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374540 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6448432-? |
SNPs | rs6448432 |
Merged | 0 |
SNP id current | 6448432 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.11-1.28] |
Platform | Affymetrix, Illumina [1831729] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002323 |