SNP Detail For rs6448432
1.Mapping Information
Human SNP ID rs6448432
Human chromosome chr4
Human SNP position 26097188
Pig chromosome chr8
Pig SNP position 20243165
2.Annotation Information
PubMed ID24449572
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/24449572
StudyNovel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.
Disease/TraitRheumatoid arthritis
Initial sample3,034 European ancestry cases, 5,271 European ancestry controls
Replication sample4,726 European ancestry cases, 2,625 European ancestry controls
Region4p15.2
Chromosome idchr4
Chromosome position26097188
Reported geneRBPJ
Mapped geneLOC105374540
Upstream gene id
Downstream gene id
SNP gene ids105374540
Upstream gene distance
Downstream gene distance
SNP risk allelers6448432-?
SNPsrs6448432
Merged0
SNP id current6448432
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.19
%95 Ci[1.11-1.28]
PlatformAffymetrix, Illumina [1831729] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002323