Human SNP ID | rs6445975 |
---|---|
Human chromosome | chr3 |
Human SNP position | 58384450 |
Pig chromosome | chr13 |
Pig SNP position | 44075090 |
PubMed ID | 18204446 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18204446 |
Study | Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 720 European ancestry female cases, 2,337 European ancestry female controls |
Replication sample | 1,846 European ancestry female cases, 1,825 European ancestry female controls |
Region | 3p14.3 |
Chromosome id | chr3 |
Chromosome position | 58384450 |
Reported gene | PXK |
Mapped gene | PXK |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54899 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6445975-C |
SNPs | rs6445975 |
Merged | 0 |
SNP id current | 6445975 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.16-1.35] |
Platform | Illumina [317501] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000142 |