SNP Detail For rs6445975
1.Mapping Information
Human SNP ID rs6445975
Human chromosome chr3
Human SNP position 58384450
Pig chromosome chr13
Pig SNP position 44075090
2.Annotation Information
PubMed ID18204446
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18204446
StudyGenome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.
Disease/TraitSystemic lupus erythematosus
Initial sample720 European ancestry female cases, 2,337 European ancestry female controls
Replication sample1,846 European ancestry female cases, 1,825 European ancestry female controls
Region3p14.3
Chromosome idchr3
Chromosome position58384450
Reported genePXK
Mapped genePXK
Upstream gene id
Downstream gene id
SNP gene ids54899
Upstream gene distance
Downstream gene distance
SNP risk allelers6445975-C
SNPsrs6445975
Merged0
SNP id current6445975
Contextintron_variant
Intergenic0
Allele frequency0.28
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.25
%95 Ci[1.16-1.35]
PlatformIllumina [317501]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST000142