Human SNP ID | rs6440003 |
---|---|
Human chromosome | chr3 |
Human SNP position | 141375367 |
Pig chromosome | chr13 |
Pig SNP position | 89959988 |
PubMed ID | 21998595 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21998595 |
Study | Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry. |
Disease/Trait | Height |
Initial sample | 20,427 African ancestry individuals |
Replication sample | Up to 16,436 African American individuals |
Region | 3q23 |
Chromosome id | chr3 |
Chromosome position | 141375367 |
Reported gene | ZBTB38 |
Mapped gene | ZBTB38 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 253461 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6440003-A |
SNPs | rs6440003 |
Merged | 0 |
SNP id current | 6440003 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.81 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 0.065 |
%95 Ci | [0.045-0.085] unit increase |
Platform | Affymetrix, Illumina [3310998] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST001263 |
PubMed ID | 18391952 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18391952 |
Study | Genome-wide association analysis identifies 20 loci that influence adult height. |
Disease/Trait | Height |
Initial sample | 13,665 European ancestry individuals |
Replication sample | 16,482 European ancestry individuals |
Region | 3q23 |
Chromosome id | chr3 |
Chromosome position | 141375367 |
Reported gene | ZBTB38 |
Mapped gene | ZBTB38 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 253461 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6440003-A |
SNPs | rs6440003 |
Merged | 0 |
SNP id current | 6440003 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.44 |
P value | 2E-24 |
Pvalue mlog | 23.698970004336 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.04-0.09] s.d. increase (males) |
Platform | Affymetrix [402951] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000174 |