SNP Detail For rs6440003
1.Mapping Information
Human SNP ID rs6440003
Human chromosome chr3
Human SNP position 141375367
Pig chromosome chr13
Pig SNP position 89959988
2.Annotation Information
PubMed ID21998595
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21998595
StudyIdentification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.
Disease/TraitHeight
Initial sample20,427 African ancestry individuals
Replication sampleUp to 16,436 African American individuals
Region3q23
Chromosome idchr3
Chromosome position141375367
Reported geneZBTB38
Mapped geneZBTB38
Upstream gene id
Downstream gene id
SNP gene ids253461
Upstream gene distance
Downstream gene distance
SNP risk allelers6440003-A
SNPsrs6440003
Merged0
SNP id current6440003
Contextintron_variant
Intergenic0
Allele frequency0.81
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta0.065
%95 Ci[0.045-0.085] unit increase
PlatformAffymetrix, Illumina [3310998] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001263
PubMed ID18391952
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18391952
StudyGenome-wide association analysis identifies 20 loci that influence adult height.
Disease/TraitHeight
Initial sample13,665 European ancestry individuals
Replication sample16,482 European ancestry individuals
Region3q23
Chromosome idchr3
Chromosome position141375367
Reported geneZBTB38
Mapped geneZBTB38
Upstream gene id
Downstream gene id
SNP gene ids253461
Upstream gene distance
Downstream gene distance
SNP risk allelers6440003-A
SNPsrs6440003
Merged0
SNP id current6440003
Contextintron_variant
Intergenic0
Allele frequency0.44
P value2E-24
Pvalue mlog23.698970004336
P value text
Or beta0.07
%95 Ci[0.04-0.09] s.d. increase (males)
PlatformAffymetrix [402951]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000174