Human SNP ID | rs6437122 |
---|---|
Human chromosome | chr2 |
Human SNP position | 157986506 |
Pig chromosome | chr15 |
Pig SNP position | 71861196 |
PubMed ID | 25469926 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25469926 |
Study | Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study. |
Disease/Trait | Sleep duration |
Initial sample | 47,180 European ancestry individuals |
Replication sample | 4,771 African American individuals |
Region | 2q24.1 |
Chromosome id | chr2 |
Chromosome position | 157986506 |
Reported gene | UPP2 |
Mapped gene | LOC100130766 - UPP2 |
Upstream gene id | 100130766 |
Downstream gene id | 151531 |
SNP gene ids | |
Upstream gene distance | 23606 |
Downstream gene distance | 8673 |
SNP risk allele | rs6437122-? |
SNPs | rs6437122 |
Merged | 0 |
SNP id current | 6437122 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (EA) |
Or beta | 3.25 |
%95 Ci | [1.84-4.66] unit decrease |
Platform | Affymetrix, Illumina [2033301] |
CNV | N |
Mapped trait | sleep duration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005271 |
Study accession | GCST002711 |