Human SNP ID | rs643531 |
---|---|
Human chromosome | chr9 |
Human SNP position | 15296036 |
Pig chromosome | chr1 |
Pig SNP position | 231346026 |
PubMed ID | 20864672 |
---|---|
Journal | Arterioscler Thromb Vasc Biol |
Link | www.ncbi.nlm.nih.gov/pubmed/20864672 |
Study | Genetic variants influencing circulating lipid levels and risk of coronary artery disease. |
Disease/Trait | HDL cholesterol |
Initial sample | up to 17,723 European ancestry individuals |
Replication sample | up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals |
Region | 9p22.3 |
Chromosome id | chr9 |
Chromosome position | 15296036 |
Reported gene | TTC39B |
Mapped gene | TTC39B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158219 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs643531-C |
SNPs | rs643531 |
Merged | 0 |
SNP id current | 643531 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.07 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 0.01 |
%95 Ci | [0.009-0.017] unit decrease |
Platform | Affymetrix, Illumina, Perlegen [2155369] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000805 |