SNP Detail For rs643531
1.Mapping Information
Human SNP ID rs643531
Human chromosome chr9
Human SNP position 15296036
Pig chromosome chr1
Pig SNP position 231346026
2.Annotation Information
PubMed ID20864672
JournalArterioscler Thromb Vasc Biol
Linkwww.ncbi.nlm.nih.gov/pubmed/20864672
StudyGenetic variants influencing circulating lipid levels and risk of coronary artery disease.
Disease/TraitHDL cholesterol
Initial sampleup to 17,723 European ancestry individuals
Replication sampleup to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals
Region9p22.3
Chromosome idchr9
Chromosome position15296036
Reported geneTTC39B
Mapped geneTTC39B
Upstream gene id
Downstream gene id
SNP gene ids158219
Upstream gene distance
Downstream gene distance
SNP risk allelers643531-C
SNPsrs643531
Merged0
SNP id current643531
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta0.01
%95 Ci[0.009-0.017] unit decrease
PlatformAffymetrix, Illumina, Perlegen [2155369] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000805