SNP Detail For rs6431393
1.Mapping Information
Human SNP ID rs6431393
Human chromosome chr2
Human SNP position 235630663
Pig chromosome chr15
Pig SNP position 149996334
2.Annotation Information
PubMed ID23667675
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23667675
StudyGenome wide association study of age at menarche in the Japanese population.
Disease/TraitMenarche (age at onset)
Initial sample15,495 Japanese ancestry females
Replication sampleNA
Region2q37.2
Chromosome idchr2
Chromosome position235630663
Reported geneAGAP1
Mapped geneAGAP1
Upstream gene id
Downstream gene id
SNP gene ids116987
Upstream gene distance
Downstream gene distance
SNP risk allelers6431393-A
SNPsrs6431393
Merged0
SNP id current6431393
Contextintron_variant
Intergenic0
Allele frequency0.4948
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.0776
%95 Ci[0.045-0.111] year increase
PlatformIllumina [2310762] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002013