Human SNP ID | rs6431393 |
---|---|
Human chromosome | chr2 |
Human SNP position | 235630663 |
Pig chromosome | chr15 |
Pig SNP position | 149996334 |
PubMed ID | 23667675 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23667675 |
Study | Genome wide association study of age at menarche in the Japanese population. |
Disease/Trait | Menarche (age at onset) |
Initial sample | 15,495 Japanese ancestry females |
Replication sample | NA |
Region | 2q37.2 |
Chromosome id | chr2 |
Chromosome position | 235630663 |
Reported gene | AGAP1 |
Mapped gene | AGAP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 116987 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6431393-A |
SNPs | rs6431393 |
Merged | 0 |
SNP id current | 6431393 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4948 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.0776 |
%95 Ci | [0.045-0.111] year increase |
Platform | Illumina [2310762] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST002013 |