Human SNP ID | rs6430538 |
---|---|
Human chromosome | chr2 |
Human SNP position | 134782397 |
Pig chromosome | chr15 |
Pig SNP position | 19762802 |
PubMed ID | 22451204 |
---|---|
Journal | Ann Neurol |
Link | www.ncbi.nlm.nih.gov/pubmed/22451204 |
Study | Meta-analysis of Parkinson__s disease: identification of a novel locus, RIT2. |
Disease/Trait | Parkinson__s disease |
Initial sample | 4,238 European ancestry cases, 4,239 European ancestry controls |
Replication sample | 3,738 European ancestry cases, 2,111 European ancestry controls |
Region | 2q21.3 |
Chromosome id | chr2 |
Chromosome position | 134782397 |
Reported gene | intergenic |
Mapped gene | TMEM163 - ACMSD |
Upstream gene id | 81615 |
Downstream gene id | 130013 |
SNP gene ids | |
Upstream gene distance | 45973 |
Downstream gene distance | 55951 |
SNP risk allele | rs6430538-? |
SNPs | rs6430538 |
Merged | 0 |
SNP id current | 6430538 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.15 |
%95 Ci | [NR] |
Platform | Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST001430 |
PubMed ID | 25064009 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25064009 |
Study | Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson__s disease. |
Disease/Trait | Parkinson__s disease |
Initial sample | 13,708 European ancestry cases, 95,282 European ancestry controls |
Replication sample | 5,353 European ancestry cases, 5,551 European ancestry controls |
Region | 2q21.3 |
Chromosome id | chr2 |
Chromosome position | 134782397 |
Reported gene | ACMSD, TMEM163 |
Mapped gene | TMEM163 - ACMSD |
Upstream gene id | 81615 |
Downstream gene id | 130013 |
SNP gene ids | |
Upstream gene distance | 45973 |
Downstream gene distance | 55951 |
SNP risk allele | rs6430538-C |
SNPs | rs6430538 |
Merged | 0 |
SNP id current | 6430538 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.57 |
P value | 9E-20 |
Pvalue mlog | 19.0457574905606 |
P value text | |
Or beta | 1.1429 |
%95 Ci | [1.11-1.17] |
Platform | Illumina [7893274] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST002544 |