SNP Detail For rs6426514
1.Mapping Information
Human SNP ID rs6426514
Human chromosome chr1
Human SNP position 228744368
Pig chromosome chr14
Pig SNP position 65510486
2.Annotation Information
PubMed ID23300278
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/23300278
StudyGenome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.
Disease/TraitType 2 diabetes
Initial sample842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls
Replication sampleup to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130
Region1q42.13
Chromosome idchr1
Chromosome position228744368
Reported geneRHOU
Mapped geneRHOU
Upstream gene id
Downstream gene id
SNP gene ids58480
Upstream gene distance
Downstream gene distance
SNP risk allelers6426514-A
SNPsrs6426514
Merged0
SNP id current6426514
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.06
P value0.000002
Pvalue mlog5.69897000433601
P value text(Punjabi Sikhs)
Or beta1.51
%95 Ci[1.27 - 1.78]
PlatformIllumina [1232008] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST001809