SNP Detail For rs6413458
1.Mapping Information
Human SNP ID rs6413458
Human chromosome chr2
Human SNP position 21008720
Pig chromosome chr3
Pig SNP position 125341963
2.Annotation Information
PubMed ID23118302
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23118302
StudyGenome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.
Disease/TraitLipoprotein-associated phospholipase A2 activity and mass
Initial sample6,851 European ancestry individuals
Replication sample13,664 European ancestry individuals
Region2p24.1
Chromosome idchr2
Chromosome position21008720
Reported geneAPOB
Mapped geneAPOB
Upstream gene id
Downstream gene id
SNP gene ids338
Upstream gene distance
Downstream gene distance
SNP risk allelers6413458-T
SNPsrs6413458
Merged0
SNP id current6413458
Contextsynonymous_variant
Intergenic0
Allele frequency0.02
P value0.0000002
Pvalue mlog6.69897000433601
P value text(mass)
Or beta0.0398
%95 Ci[0.0088-0.0708] ng/ml decrease
PlatformIllumina [796174]
CNVN
Mapped traitlipoprotein-associated phospholipase A(2) measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004746
Study accessionGCST001727