SNP Detail For rs637644
1.Mapping Information
Human SNP ID rs637644
Human chromosome chr18
Human SNP position 65231430
Pig chromosome chr1
Pig SNP position 174301272
2.Annotation Information
PubMed ID24025145
JournalBreast Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24025145
StudyA genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
Disease/TraitAdverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)
Initial sample64 Japanese ancestry cases, 27 Japanese ancestry controls
Replication sampleNA
Region18q22.1
Chromosome idchr18
Chromosome position65231430
Reported geneCDH7
Mapped geneLOC105372168 - LOC105372169
Upstream gene id105372168
Downstream gene id105372169
SNP gene ids
Upstream gene distance87302
Downstream gene distance233462
SNP risk allelers637644-G
SNPsrs637644
Merged0
SNP id current637644
Contextintergenic_variant
Intergenic1
Allele frequency0.8
P value0.000007
Pvalue mlog5.15490195998574
P value text(Allelic)
Or beta32.5
%95 Ci[4.08-259]
PlatformIllumina [555600]
CNVN
Mapped traitresponse to cyclophosphamide, chemotherapy-induced alopecia, response to 5__ fluorouracil, response to doxorubicin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_1902518, http://www.ebi.ac.uk/efo/EFO_0005400, http://purl.obolibrary.org/obo/GO_0036275, http://purl.obolibrary.org/obo/GO_1902520
Study accessionGCST002178