SNP Detail For rs636291
1.Mapping Information
Human SNP ID rs636291
Human chromosome chr1
Human SNP position 10496040
Pig chromosome chr6
Pig SNP position 64689749
2.Annotation Information
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region1p36.22
Chromosome idchr1
Chromosome position10496040
Reported genePEX14
Mapped genePEX14
Upstream gene id
Downstream gene id
SNP gene ids5195
Upstream gene distance
Downstream gene distance
SNP risk allelers636291-A
SNPsrs636291
Merged0
SNP id current636291
Contextintron_variant
Intergenic0
Allele frequency0.16
P value0.00000002
Pvalue mlog7.69897000433601
P value text(EA, early-onset)
Or beta1.18
%95 Ci[1.12-1.24]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606