SNP Detail For rs632057
1.Mapping Information
Human SNP ID rs632057
Human chromosome chr6
Human SNP position 139512875
Pig chromosome chr1
Pig SNP position 28173360
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular hemoglobin
Initial sampleUp to 14,362 Japanese ancestry individuals
Replication sampleNA
Region6q24.1
Chromosome idchr6
Chromosome position139512875
Reported geneCITED2
Mapped geneLOC645434 - LOC105378023
Upstream gene id645434
Downstream gene id105378023
SNP gene ids
Upstream gene distance38279
Downstream gene distance12629
SNP risk allelers632057-G
SNPsrs632057
Merged0
SNP id current632057
Contextintergenic_variant
Intergenic1
Allele frequency0.25
P value0.000000001
Pvalue mlog9
P value text
Or beta0.081
%95 Ci[0.056-0.106] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traithemoglobin measurement, mean corpuscular hemoglobin
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527
Study accessionGCST000587
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular volume
Initial sample14,364 Japanese ancestry individuals
Replication sampleNA
Region6q24.1
Chromosome idchr6
Chromosome position139512875
Reported geneCITED2
Mapped geneLOC645434 - LOC105378023
Upstream gene id645434
Downstream gene id105378023
SNP gene ids
Upstream gene distance38279
Downstream gene distance12629
SNP risk allelers632057-G
SNPsrs632057
Merged0
SNP id current632057
Contextintergenic_variant
Intergenic1
Allele frequency0.25
P value0.000000001
Pvalue mlog9
P value text
Or beta0.082
%95 Ci[0.057-0.107] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traitmean corpuscular volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004526
Study accessionGCST000585