Human SNP ID | rs632057 |
---|---|
Human chromosome | chr6 |
Human SNP position | 139512875 |
Pig chromosome | chr1 |
Pig SNP position | 28173360 |
PubMed ID | 20139978 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular hemoglobin |
Initial sample | Up to 14,362 Japanese ancestry individuals |
Replication sample | NA |
Region | 6q24.1 |
Chromosome id | chr6 |
Chromosome position | 139512875 |
Reported gene | CITED2 |
Mapped gene | LOC645434 - LOC105378023 |
Upstream gene id | 645434 |
Downstream gene id | 105378023 |
SNP gene ids | |
Upstream gene distance | 38279 |
Downstream gene distance | 12629 |
SNP risk allele | rs632057-G |
SNPs | rs632057 |
Merged | 0 |
SNP id current | 632057 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 0.081 |
%95 Ci | [0.056-0.106] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | hemoglobin measurement, mean corpuscular hemoglobin |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527 |
Study accession | GCST000587 |
PubMed ID | 20139978 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular volume |
Initial sample | 14,364 Japanese ancestry individuals |
Replication sample | NA |
Region | 6q24.1 |
Chromosome id | chr6 |
Chromosome position | 139512875 |
Reported gene | CITED2 |
Mapped gene | LOC645434 - LOC105378023 |
Upstream gene id | 645434 |
Downstream gene id | 105378023 |
SNP gene ids | |
Upstream gene distance | 38279 |
Downstream gene distance | 12629 |
SNP risk allele | rs632057-G |
SNPs | rs632057 |
Merged | 0 |
SNP id current | 632057 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 0.082 |
%95 Ci | [0.057-0.107] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | mean corpuscular volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004526 |
Study accession | GCST000585 |