Human SNP ID | rs627386 |
---|---|
Human chromosome | chr17 |
Human SNP position | 49213433 |
Pig chromosome | chr12 |
Pig SNP position | 25371483 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 17q21.32 |
Chromosome id | chr17 |
Chromosome position | 49213433 |
Reported gene | NR |
Mapped gene | ABI3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51225 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs627386-G |
SNPs | rs627386 |
Merged | 0 |
SNP id current | 627386 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.974019461024499 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (IGP9) |
Or beta | 0.5473 |
%95 Ci | [0.32-0.78] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |