SNP Detail For rs627386
1.Mapping Information
Human SNP ID rs627386
Human chromosome chr17
Human SNP position 49213433
Pig chromosome chr12
Pig SNP position 25371483
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region17q21.32
Chromosome idchr17
Chromosome position49213433
Reported geneNR
Mapped geneABI3
Upstream gene id
Downstream gene id
SNP gene ids51225
Upstream gene distance
Downstream gene distance
SNP risk allelers627386-G
SNPsrs627386
Merged0
SNP id current627386
Contextintron_variant
Intergenic0
Allele frequency0.974019461024499
P value0.000004
Pvalue mlog5.39794000867203
P value text(IGP9)
Or beta0.5473
%95 Ci[0.32-0.78] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848