SNP Detail For rs62176107
1.Mapping Information
Human SNP ID rs62176107
Human chromosome chr2
Human SNP position 178436244
Pig chromosome chr15
Pig SNP position 93672574
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region2q31.2
Chromosome idchr2
Chromosome position178436244
Reported genePRKRA, miRNA548n
Mapped genePRKRA, LOC101927027
Upstream gene id
Downstream gene id
SNP gene ids8575, 101927027
Upstream gene distance
Downstream gene distance
SNP risk allelers62176107 -?
SNPsrs62176107
Merged0
SNP id current62176107
Contextsynonymous_variant
Intergenic0
Allele frequencyNR
P value1E-34
Pvalue mlog34
P value text(Opposed)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitatopic eczema, psoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740