SNP Detail For rs62174474
1.Mapping Information
Human SNP ID rs62174474
Human chromosome chr2
Human SNP position 187315682
Pig chromosome chr15
Pig SNP position 102411820
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitVascular brain injury
Initial sampleup to 2,940 individuals
Replication sampleNA
Region2q32.1
Chromosome idchr2
Chromosome position187315682
Reported geneintergenic
Mapped geneLOC105373787 - CALCRL
Upstream gene id105373787
Downstream gene id10203
SNP gene ids
Upstream gene distance165969
Downstream gene distance26281
SNP risk allelers62174474-C
SNPsrs62174474
Merged0
SNP id current62174474
Contextintron_variant
Intergenic1
Allele frequency0.9439
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.7084
%95 Ci[0.4-1.02] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitvascular brain injury measurement, vascular brain injury
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006800, http://www.ebi.ac.uk/efo/EFO_0006791
Study accessionGCST002590