Human SNP ID | rs62096106 |
---|---|
Human chromosome | chr18 |
Human SNP position | 62171686 |
Pig chromosome | chr1 |
Pig SNP position | 176786109 |
PubMed ID | 25461247 |
---|---|
Journal | Pharmacogenet Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/25461247 |
Study | Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols. |
Disease/Trait | Response to abacavir-containing treatment in HIV-1 infection (virologic failure) |
Initial sample | Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals |
Replication sample | NA |
Region | 18q21.33 |
Chromosome id | chr18 |
Chromosome position | 62171686 |
Reported gene | NR |
Mapped gene | PIGN |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23556 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs62096106-G |
SNPs | rs62096106 |
Merged | 0 |
SNP id current | 62096106 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (phenotype 3) |
Or beta | 3.57 |
%95 Ci | [NR] |
Platform | Illumina [> 8000000] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, virologic response measurement, response to abacavir |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006906, http://www.ebi.ac.uk/efo/EFO_0006905 |
Study accession | GCST002769 |
PubMed ID | 25461247 |
Journal | Pharmacogenet Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/25461247 |
Study | Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols. |
Disease/Trait | Response to efavirenz-containing treatment in HIV 1 infection (virologic failure) |
Initial sample | Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals |
Replication sample | NA |
Region | 18q21.33 |
Chromosome id | chr18 |
Chromosome position | 62171686 |
Reported gene | NR |
Mapped gene | PIGN |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23556 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs62096106-G |
SNPs | rs62096106 |
Merged | 0 |
SNP id current | 62096106 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (phenotype 1) |
Or beta | 3.57 |
%95 Ci | [NR] |
Platform | Illumina [> 8000000] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, response to efavirenz, virologic response measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906 |
Study accession | GCST002771 |