SNP Detail For rs62024303
1.Mapping Information
Human SNP ID rs62024303
Human chromosome chr15
Human SNP position 88327931
Pig chromosome JH118799-1
Pig SNP position 35121
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region15q25.3
Chromosome idchr15
Chromosome position88327931
Reported geneNR
Mapped geneLOC105370958 - LOC105370959
Upstream gene id105370958
Downstream gene id105370959
SNP gene ids
Upstream gene distance5654
Downstream gene distance17011
SNP risk allelers62024303-?
SNPsrs62024303
Merged
SNP id current62024303
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Latino)
Or beta1.2385
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956