SNP Detail For rs61921502
1.Mapping Information
Human SNP ID rs61921502
Human chromosome chr12
Human SNP position 65438688
Pig chromosome chr5
Pig SNP position 33012491
2.Annotation Information
PubMed ID25607358
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25607358
StudyCommon genetic variants influence human subcortical brain structures.
Disease/TraitSubcortical brain region volumes
Initial sampleup to 13,171 European ancestry individuals
Replication sampleup to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals
Region12q14.3
Chromosome idchr12
Chromosome position65438688
Reported geneMSRB3
Mapped geneMSRB3
Upstream gene id
Downstream gene id
SNP gene ids253827
Upstream gene distance
Downstream gene distance
SNP risk allelers61921502-T
SNPsrs61921502
Merged0
SNP id current61921502
Contextintron_variant
Intergenic0
Allele frequency0.84
P value0.00000000007
Pvalue mlog10.1549019599857
P value text(Hippocampus, EA)
Or beta39.9
%95 Ci[27.90-51.90] mm3 increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traithippocampal volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005035
Study accessionGCST002756