SNP Detail For rs61743495
1.Mapping Information
Human SNP ID rs61743495
Human chromosome chr16
Human SNP position 1434454
Pig chromosome chr3
Pig SNP position 41892902
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region16p13.3
Chromosome idchr16
Chromosome position1434454
Reported geneNR
Mapped geneCCDC154
Upstream gene id
Downstream gene id
SNP gene ids645811
Upstream gene distance
Downstream gene distance
SNP risk allelers61743495-?
SNPsrs61743495
Merged
SNP id current61743495
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(Native Hawaiian)
Or beta0.9229
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957