SNP Detail For rs61571577
1.Mapping Information
Human SNP ID rs61571577
Human chromosome chr2
Human SNP position 47009297
Pig chromosome chr3
Pig SNP position 99604733
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region2p21
Chromosome idchr2
Chromosome position47009297
Reported geneNR
Mapped geneTTC7A
Upstream gene id
Downstream gene id
SNP gene ids57217
Upstream gene distance
Downstream gene distance
SNP risk allelers61571577-?
SNPsrs61571577
Merged
SNP id current61571577
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text(Latino)
Or beta1.1768
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957