SNP Detail For rs613872
1.Mapping Information
Human SNP ID rs613872
Human chromosome chr18
Human SNP position 55543071
Pig chromosome chr1
Pig SNP position 115432210
2.Annotation Information
PubMed ID20825314
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/20825314
StudyE2-2 protein and Fuchs__s corneal dystrophy.
Disease/TraitFuchs__s corneal dystrophy
Initial sample130 European ancestry cases, 260 European ancestry controls
Replication sample150 cases, 150 controls
Region18q21.2
Chromosome idchr18
Chromosome position55543071
Reported geneTCF4
Mapped geneTCF4
Upstream gene id
Downstream gene id
SNP gene ids6925
Upstream gene distance
Downstream gene distance
SNP risk allelers613872-G
SNPsrs613872
Merged0
SNP id current613872
Contextintron_variant
Intergenic0
Allele frequency0.15
P value0.000000000000000001
Pvalue mlog18
P value text
Or beta5.47
%95 Ci[3.75-7.99]
PlatformIllumina [~ 370000]
CNVN
Mapped traitFuchs__ endothelial dystrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003946
Study accessionGCST000790