Human SNP ID | rs613872 |
---|---|
Human chromosome | chr18 |
Human SNP position | 55543071 |
Pig chromosome | chr1 |
Pig SNP position | 115432210 |
PubMed ID | 20825314 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/20825314 |
Study | E2-2 protein and Fuchs__s corneal dystrophy. |
Disease/Trait | Fuchs__s corneal dystrophy |
Initial sample | 130 European ancestry cases, 260 European ancestry controls |
Replication sample | 150 cases, 150 controls |
Region | 18q21.2 |
Chromosome id | chr18 |
Chromosome position | 55543071 |
Reported gene | TCF4 |
Mapped gene | TCF4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6925 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs613872-G |
SNPs | rs613872 |
Merged | 0 |
SNP id current | 613872 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.15 |
P value | 0.000000000000000001 |
Pvalue mlog | 18 |
P value text | |
Or beta | 5.47 |
%95 Ci | [3.75-7.99] |
Platform | Illumina [~ 370000] |
CNV | N |
Mapped trait | Fuchs__ endothelial dystrophy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003946 |
Study accession | GCST000790 |