SNP Detail For rs6136813
1.Mapping Information
Human SNP ID rs6136813
Human chromosome chr20
Human SNP position 19693574
Pig chromosome chr17
Pig SNP position 31435219
2.Annotation Information
PubMed ID21685187
JournalThorax
Linkwww.ncbi.nlm.nih.gov/pubmed/21685187
StudyGenome-wide association study of smoking behaviours in patients with COPD.
Disease/TraitAge at smoking initiation in chronic obstructive pulmonary disease
Initial sample3,397 European ancestry cases
Replication sampleNA
Region20p11.23
Chromosome idchr20
Chromosome position19693574
Reported geneSLC24A3
Mapped geneSLC24A3
Upstream gene id
Downstream gene id
SNP gene ids57419
Upstream gene distance
Downstream gene distance
SNP risk allelers6136813-T
SNPsrs6136813
Merged0
SNP id current6136813
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.26
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.043
%95 Ciunit increase
PlatformIllumina [~ 6300000] (imputed)
CNVN
Mapped traitchronic obstructive pulmonary disease, smoking initiation
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005670
Study accessionGCST001113