SNP Detail For rs6136
1.Mapping Information
Human SNP ID rs6136
Human chromosome chr1
Human SNP position 169594713
Pig chromosome chr4
Pig SNP position 89019697
2.Annotation Information
PubMed ID20167578
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20167578
StudyLarge-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.
Disease/TraitSoluble levels of adhesion molecules
Initial sampleUp to 9,813 European ancestry individuals
Replication sampleNA
Region1q24.2
Chromosome idchr1
Chromosome position169594713
Reported geneSELP
Mapped geneSELP
Upstream gene id
Downstream gene id
SNP gene ids6403
Upstream gene distance
Downstream gene distance
SNP risk allelers6136-T
SNPsrs6136
Merged0
SNP id current6136
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value4E-61
Pvalue mlog60.397940008672
P value text(P-Selectin)
Or beta22.6
%95 Ci[19.86-25.34] % increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitsoluble P-selectin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004519
Study accessionGCST000599