Human SNP ID | rs6127921 |
---|---|
Human chromosome | chr20 |
Human SNP position | 57063694 |
Pig chromosome | chr17 |
Pig SNP position | 64675675 |
PubMed ID | 19846067 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/19846067 |
Study | A genomewide association study of citalopram response in major depressive disorder. |
Disease/Trait | Response to citalopram treatment |
Initial sample | Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders |
Replication sample | NA |
Region | 20q13.31 |
Chromosome id | chr20 |
Chromosome position | 57063694 |
Reported gene | BMP7 |
Mapped gene | LOC105372684 - LOC105372685 |
Upstream gene id | 105372684 |
Downstream gene id | 105372685 |
SNP gene ids | |
Upstream gene distance | 12167 |
Downstream gene distance | 53495 |
SNP risk allele | rs6127921-? |
SNPs | rs6127921 |
Merged | 0 |
SNP id current | 6127921 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.82 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (response) |
Or beta | 1.64 |
%95 Ci | [1.33-2.04] |
Platform | Affymetrix [430198] |
CNV | N |
Mapped trait | response to antidepressant |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0036276 |
Study accession | GCST000509 |
PubMed ID | 19846067 |
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/19846067 |
Study | A genomewide association study of citalopram response in major depressive disorder. |
Disease/Trait | Response to citalopram treatment |
Initial sample | Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders |
Replication sample | NA |
Region | 20q13.31 |
Chromosome id | chr20 |
Chromosome position | 57063694 |
Reported gene | BMP7 |
Mapped gene | LOC105372684 - LOC105372685 |
Upstream gene id | 105372684 |
Downstream gene id | 105372685 |
SNP gene ids | |
Upstream gene distance | 12167 |
Downstream gene distance | 53495 |
SNP risk allele | rs6127921-? |
SNPs | rs6127921 |
Merged | 0 |
SNP id current | 6127921 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.81 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (remission) |
Or beta | 1.75 |
%95 Ci | [1.39-2.17] |
Platform | Affymetrix [430198] |
CNV | N |
Mapped trait | response to antidepressant |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0036276 |
Study accession | GCST000509 |