SNP Detail For rs6120141
1.Mapping Information
Human SNP ID rs6120141
Human chromosome chr20
Human SNP position 33180849
Pig chromosome chr17
Pig SNP position 41649759
2.Annotation Information
PubMed ID24556642
JournalCaries Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24556642
StudyGenome-wide association study of primary dentition pit-and-fissure and smooth surface caries.
Disease/TraitSmooth-surface caries
Initial sample1006 European ancestry individuals
Replication sampleNA
Region20q11.21
Chromosome idchr20
Chromosome position33180849
Reported geneBPIFA2, C20orf70
Mapped geneBPIFA2
Upstream gene id
Downstream gene id
SNP gene ids140683
Upstream gene distance
Downstream gene distance
SNP risk allelers6120141-T
SNPsrs6120141
Merged0
SNP id current6120141
Contextintron_variant
Intergenic0
Allele frequency0.0252
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta5.0772
%95 Ci[NR] unit decrease
PlatformIllumina [1216189] (imputed)
CNVN
Mapped traitsmooth surface dental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006339
Study accessionGCST002361