SNP Detail For rs6110278
1.Mapping Information
Human SNP ID rs6110278
Human chromosome chr20
Human SNP position 14407569
Pig chromosome chr17
Pig SNP position 25746016
2.Annotation Information
PubMed ID19820697
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19820697
StudyA genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.
Disease/TraitMean platelet volume
Initial sample4,627 European ancestry individuals
Replication sample9,316 European ancestry individuals
Region20p12.1
Chromosome idchr20
Chromosome position14407569
Reported geneNR
Mapped geneMACROD2
Upstream gene id
Downstream gene id
SNP gene ids140733
Upstream gene distance
Downstream gene distance
SNP risk allelers6110278-T
SNPsrs6110278
Merged0
SNP id current6110278
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta0.01
%95 Ci[0.005-0.013] fl increase
PlatformAffymetrix, Illumina [~ 2110000] (imputed)
CNVN
Mapped traitmean platelet volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004584
Study accessionGCST000497