SNP Detail For rs6107853
1.Mapping Information
Human SNP ID rs6107853
Human chromosome chr20
Human SNP position 6629230
Pig chromosome chr17
Pig SNP position 17123644
2.Annotation Information
PubMed ID23669352
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23669352
StudyGenome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.
Disease/TraitBody mass index
Initial sampleUp to 13,627 European ancestry individuals
Replication sampleUp to 16,253 European ancestry individuals
Region20p12.3
Chromosome idchr20
Chromosome position6629230
Reported geneBMP2
Mapped geneCASC20 - LOC105372516
Upstream gene id101929244
Downstream gene id105372516
SNP gene ids
Upstream gene distance100771
Downstream gene distance101561
SNP risk allelers6107853-A
SNPsrs6107853
Merged0
SNP id current6107853
Contextintergenic_variant
Intergenic1
Allele frequency0.45
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.04
%95 Ci[0.022-0.058] unit increase
PlatformAffymetrix, Illumina [557887] (imputed)
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002021