Human SNP ID | rs6104690 |
---|---|
Human chromosome | chr20 |
Human SNP position | 11007451 |
Pig chromosome | chr17 |
Pig SNP position | 22439882 |
PubMed ID | 24163127 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24163127 |
Study | Genome-wide association study identifies multiple loci associated with bladder cancer risk. |
Disease/Trait | Bladder cancer |
Initial sample | 6,911 European ancestry cases, 11,818 European ancestry controls |
Replication sample | 801 cases, 1,307 controls |
Region | 20p12.2 |
Chromosome id | chr20 |
Chromosome position | 11007451 |
Reported gene | C20orf187, LOC339593 |
Mapped gene | C20orf187 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 728434 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6104690-A |
SNPs | rs6104690 |
Merged | 0 |
SNP id current | 6104690 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.56 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.1236 |
%95 Ci | [1.08-1.18] |
Platform | Illumina [462190] |
CNV | N |
Mapped trait | bladder carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000292 |
Study accession | GCST002243 |