SNP Detail For rs6104690
1.Mapping Information
Human SNP ID rs6104690
Human chromosome chr20
Human SNP position 11007451
Pig chromosome chr17
Pig SNP position 22439882
2.Annotation Information
PubMed ID24163127
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24163127
StudyGenome-wide association study identifies multiple loci associated with bladder cancer risk.
Disease/TraitBladder cancer
Initial sample6,911 European ancestry cases, 11,818 European ancestry controls
Replication sample801 cases, 1,307 controls
Region20p12.2
Chromosome idchr20
Chromosome position11007451
Reported geneC20orf187, LOC339593
Mapped geneC20orf187
Upstream gene id
Downstream gene id
SNP gene ids728434
Upstream gene distance
Downstream gene distance
SNP risk allelers6104690-A
SNPsrs6104690
Merged0
SNP id current6104690
Contextintergenic_variant
Intergenic0
Allele frequency0.56
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.1236
%95 Ci[1.08-1.18]
PlatformIllumina [462190]
CNVN
Mapped traitbladder carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000292
Study accessionGCST002243