SNP Detail For rs6102059
1.Mapping Information
Human SNP ID rs6102059
Human chromosome chr20
Human SNP position 40600144
Pig chromosome chr17
Pig SNP position 48615981
2.Annotation Information
PubMed ID19060906
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19060906
StudyCommon variants at 30 loci contribute to polygenic dyslipidemia.
Disease/TraitLDL cholesterol
Initial sample19,840 European ancestry individuals
Replication sampleUp to 20,623 European ancestry individuals
Region20q12
Chromosome idchr20
Chromosome position40600144
Reported geneMAFB
Mapped geneLOC102724968
Upstream gene id
Downstream gene id
SNP gene ids102724968
Upstream gene distance
Downstream gene distance
SNP risk allelers6102059-T
SNPsrs6102059
Merged0
SNP id current6102059
Contextintergenic_variant
Intergenic0
Allele frequency0.32
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta0.06
%95 Ci[0.03-0.10] s.d. decrease
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST000287