SNP Detail For rs6092477
1.Mapping Information
Human SNP ID rs6092477
Human chromosome chr20
Human SNP position 57416639
Pig chromosome chr17
Pig SNP position 64970275
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular volume
Initial sample14,364 Japanese ancestry individuals
Replication sampleNA
Region20q13.31
Chromosome idchr20
Chromosome position57416639
Reported geneRBM38
Mapped geneRBM38 - LOC105372688
Upstream gene id55544
Downstream gene id105372688
SNP gene ids
Upstream gene distance7306
Downstream gene distance43835
SNP risk allelers6092477-G
SNPsrs6092477
Merged0
SNP id current6092477
Contextintergenic_variant
Intergenic1
Allele frequency0.42
P value0.00000001
Pvalue mlog8
P value text
Or beta0.068
%95 Ci[0.044-0.092] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traitmean corpuscular volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004526
Study accessionGCST000585