SNP Detail For rs6092078
1.Mapping Information
Human SNP ID rs6092078
Human chromosome chr20
Human SNP position 55184590
Pig chromosome chr17
Pig SNP position 62974841
2.Annotation Information
PubMed ID20195266
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20195266
StudyGenomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.
Disease/TraitResponse to antipsychotic treatment
Initial sample421 European ancestry, 214 African American, and 103 cases
Replication sampleNA
Region20q13.2
Chromosome idchr20
Chromosome position55184590
Reported geneintergenic
Mapped geneRPL12P4 - LINC01441
Upstream gene id116149
Downstream gene id101927796
SNP gene ids
Upstream gene distance109412
Downstream gene distance235746
SNP risk allelers6092078-?
SNPsrs6092078
Merged0
SNP id current6092078
Contextintergenic_variant
Intergenic1
Allele frequency0.115
P value0.000003
Pvalue mlog5.52287874528033
P value text(risperidone-hip circumference)
Or beta
%95 Ci
PlatformAffymetrix [492900]
CNVN
Mapped traitresponse to risperidone
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097336
Study accessionGCST000618