SNP Detail For rs6087990
1.Mapping Information
Human SNP ID rs6087990
Human chromosome chr20
Human SNP position 32762102
Pig chromosome chr17
Pig SNP position 41282374
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitUlcerative colitis
Initial sample6,968 European ancestry cases, 20,464 European ancestry controls
Replication sample10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region20q11.21
Chromosome idchr20
Chromosome position32762102
Reported geneNR
Mapped geneCOMMD7 - DNMT3B
Upstream gene id149951
Downstream gene id1789
SNP gene ids
Upstream gene distance18094
Downstream gene distance283
SNP risk allelers6087990-G
SNPsrs6087990
Merged
SNP id current6087990
Contextupstream_gene_variant
Intergenic1
Allele frequency0.4056
P value0.000006
Pvalue mlog5.22184874961635
P value text(EA)
Or beta1.0586283
%95 Ci[1.03-1.08]
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST003045