SNP Detail For rs6087771
1.Mapping Information
Human SNP ID rs6087771
Human chromosome chr20
Human SNP position 31718921
Pig chromosome chr17
Pig SNP position 40248671
2.Annotation Information
PubMed ID25607358
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25607358
StudyCommon genetic variants influence human subcortical brain structures.
Disease/TraitSubcortical brain region volumes
Initial sampleup to 13,171 European ancestry individuals
Replication sampleup to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals
Region20q11.21
Chromosome idchr20
Chromosome position31718921
Reported geneBCL2L1
Mapped geneBCL2L1
Upstream gene id
Downstream gene id
SNP gene ids598
Upstream gene distance
Downstream gene distance
SNP risk allelers6087771-T
SNPsrs6087771
Merged0
SNP id current6087771
Contextintron_variant
Intergenic0
Allele frequency0.71
P value0.000000000001
Pvalue mlog12
P value text(Putamen, EA)
Or beta33.58
%95 Ci[24.31-42.85] mm3 increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitputamen volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006932
Study accessionGCST002756