Human SNP ID | rs6077251 |
---|---|
Human chromosome | chr20 |
Human SNP position | 7771719 |
Pig chromosome | chr17 |
Pig SNP position | 18619253 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin) |
Initial sample | 176 Japanese ancestry cases, 471 Japanese ancestry controls |
Replication sample | NA |
Region | 20p12.3 |
Chromosome id | chr20 |
Chromosome position | 7771719 |
Reported gene | SFRS13AP2 |
Mapped gene | LOC105372518 - SRSF10P2 |
Upstream gene id | 105372518 |
Downstream gene id | 171472 |
SNP gene ids | |
Upstream gene distance | 46723 |
Downstream gene distance | 59782 |
SNP risk allele | rs6077251-T |
SNPs | rs6077251 |
Merged | 0 |
SNP id current | 6077251 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.153 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Allelic model) |
Or beta | 2.065 |
%95 Ci | [1.537-2.773] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to cisplatin, response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0072718, http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST002007 |