Human SNP ID | rs6073972 |
---|---|
Human chromosome | chr20 |
Human SNP position | 45961659 |
Pig chromosome | chr17 |
Pig SNP position | 53783786 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 20q13.12 |
Chromosome id | chr20 |
Chromosome position | 45961659 |
Reported gene | PLTP |
Mapped gene | ZNF335 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 63925 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6073972-C |
SNPs | rs6073972 |
Merged | |
SNP id current | 6073972 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.81 |
P value | 0.000000000000000009 |
Pvalue mlog | 17.0457574905606 |
P value text | |
Or beta | 0.065 |
%95 Ci | [0.049-0.081] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002899 |