SNP Detail For rs6073972
1.Mapping Information
Human SNP ID rs6073972
Human chromosome chr20
Human SNP position 45961659
Pig chromosome chr17
Pig SNP position 53783786
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region20q13.12
Chromosome idchr20
Chromosome position45961659
Reported genePLTP
Mapped geneZNF335
Upstream gene id
Downstream gene id
SNP gene ids63925
Upstream gene distance
Downstream gene distance
SNP risk allelers6073972-C
SNPsrs6073972
Merged
SNP id current6073972
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.81
P value0.000000000000000009
Pvalue mlog17.0457574905606
P value text
Or beta0.065
%95 Ci[0.049-0.081] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899