SNP Detail For rs6073450
1.Mapping Information
Human SNP ID rs6073450
Human chromosome chr20
Human SNP position 44458008
Pig chromosome chr17
Pig SNP position 52316203
2.Annotation Information
PubMed ID26098869
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26098869
StudyCommon variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.
Disease/TraitPancreatic cancer
Initial sample7,638 cases, 7,364 controls
Replication sample2,287 cases, 4,205 controls
Region20q13.12
Chromosome idchr20
Chromosome position44458008
Reported geneintergenic
Mapped geneLINC01430 - C20orf62
Upstream gene id101927242
Downstream gene id140834
SNP gene ids
Upstream gene distance7451
Downstream gene distance3755
SNP risk allelers6073450-A
SNPsrs6073450
Merged
SNP id current6073450
Contextintron_variant
Intergenic1
Allele frequency0.381
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.11
%95 Ci[1.06-1.15]
PlatformIllumina [866891] (imputed)
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST002991