Human SNP ID | rs6066825 |
---|---|
Human chromosome | chr20 |
Human SNP position | 48723580 |
Pig chromosome | chr17 |
Pig SNP position | 56850877 |
PubMed ID | 26151821 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26151821 |
Study | Genome-wide association study of colorectal cancer identifies six new susceptibility loci. |
Disease/Trait | Colorectal cancer |
Initial sample | 18,299 European ancestry cases, 19,656 European ancestry controls |
Replication sample | 4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls |
Region | 20q13.13 |
Chromosome id | chr20 |
Chromosome position | 48723580 |
Reported gene | PREX1 |
Mapped gene | PREX1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57580 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6066825-A |
SNPs | rs6066825 |
Merged | |
SNP id current | 6066825 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.64 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.06-1.12] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST003017 |