SNP Detail For rs6066825
1.Mapping Information
Human SNP ID rs6066825
Human chromosome chr20
Human SNP position 48723580
Pig chromosome chr17
Pig SNP position 56850877
2.Annotation Information
PubMed ID26151821
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26151821
StudyGenome-wide association study of colorectal cancer identifies six new susceptibility loci.
Disease/TraitColorectal cancer
Initial sample18,299 European ancestry cases, 19,656 European ancestry controls
Replication sample4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls
Region20q13.13
Chromosome idchr20
Chromosome position48723580
Reported genePREX1
Mapped genePREX1
Upstream gene id
Downstream gene id
SNP gene ids57580
Upstream gene distance
Downstream gene distance
SNP risk allelers6066825-A
SNPsrs6066825
Merged
SNP id current6066825
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.09
%95 Ci[1.06-1.12]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST003017