Human SNP ID | rs606458 |
---|---|
Human chromosome | chr11 |
Human SNP position | 64778919 |
Pig chromosome | chr2 |
Pig SNP position | 6523485 |
PubMed ID | 21768215 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21768215 |
Study | Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele. |
Disease/Trait | Urate levels |
Initial sample | 8,651 African American individuals |
Replication sample | 1,996 African American individuals |
Region | 11q13.1 |
Chromosome id | chr11 |
Chromosome position | 64778919 |
Reported gene | PYGM, RASGRP2, CDC42BPG, NRXN2, MAP4K2, MEN1, SF1 |
Mapped gene | SF1 - MAP4K2 |
Upstream gene id | 7536 |
Downstream gene id | 5871 |
SNP gene ids | |
Upstream gene distance | 75 |
Downstream gene distance | 10218 |
SNP risk allele | rs606458-T |
SNPs | rs606458 |
Merged | 0 |
SNP id current | 606458 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.35 |
P value | 0.00000000006 |
Pvalue mlog | 10.2218487496163 |
P value text | (AA) |
Or beta | 0.18 |
%95 Ci | [NR] mg/dl decrease |
Platform | Affymetrix [NR] (imputed) |
CNV | N |
Mapped trait | urate measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004531 |
Study accession | GCST001163 |