SNP Detail For rs6058869
1.Mapping Information
Human SNP ID rs6058869
Human chromosome chr20
Human SNP position 32760944
Pig chromosome chr17
Pig SNP position 41281216
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region20q11.21
Chromosome idchr20
Chromosome position32760944
Reported geneNR
Mapped geneCOMMD7 - DNMT3B
Upstream gene id149951
Downstream gene id1789
SNP gene ids
Upstream gene distance16936
Downstream gene distance1441
SNP risk allelers6058869-?
SNPsrs6058869
Merged
SNP id current6058869
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043