SNP Detail For rs6055685
1.Mapping Information
Human SNP ID rs6055685
Human chromosome chr20
Human SNP position 8233139
Pig chromosome chr17
Pig SNP position 19180102
2.Annotation Information
PubMed ID26079190
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26079190
StudyA genome-wide association study of suicidal behavior.
Disease/TraitSuicide ideation score in major depressive disorder
Initial sample358 European ancestry individuals
Replication sampleNA
Region20p12.3
Chromosome idchr20
Chromosome position8233139
Reported genePLCB1
Mapped genePLCB1
Upstream gene id
Downstream gene id
SNP gene ids23236
Upstream gene distance
Downstream gene distance
SNP risk allelers6055685-A
SNPsrs6055685
Merged
SNP id current6055685
Contextintron_variant
Intergenic0
Allele frequency0.18
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta3.568
%95 CiSuicidal ideation score increase
PlatformIllumina [794207]
CNVN
Mapped traitsuicide ideation measurement, unipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007619, http://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST002974