SNP Detail For rs6054906
1.Mapping Information
Human SNP ID rs6054906
Human chromosome chr20
Human SNP position 7314256
Pig chromosome chr17
Pig SNP position 18037932
2.Annotation Information
PubMed ID22952603
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22952603
StudyGenome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Disease/TraitResponse to amphetamines
Initial sample1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals
Replication sampleNA
Region20p12.3
Chromosome idchr20
Chromosome position7314256
Reported geneintergenic
Mapped geneLOC101929288 - LOC101929312
Upstream gene id101929288
Downstream gene id101929312
SNP gene ids
Upstream gene distance6749
Downstream gene distance33177
SNP risk allelers6054906-?
SNPsrs6054906
Merged0
SNP id current6054906
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(SF4)
Or beta
%95 Ci
PlatformAffymetrix [5476100] (imputed)
CNVN
Mapped traitresponse to drug
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042493
Study accessionGCST001651