Human SNP ID | rs6054512 |
---|---|
Human chromosome | chr20 |
Human SNP position | 6780865 |
Pig chromosome | chr17 |
Pig SNP position | 17064738 |
PubMed ID | 24144296 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24144296 |
Study | Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. |
Disease/Trait | Axial length |
Initial sample | 12,531 European ancestry individuals |
Replication sample | 8,216 Asian ancestry individuals |
Region | 20p12.3 |
Chromosome id | chr20 |
Chromosome position | 6780865 |
Reported gene | BMP2 |
Mapped gene | BMP2 - LINC01428 |
Upstream gene id | 650 |
Downstream gene id | 101929265 |
SNP gene ids | |
Upstream gene distance | 602 |
Downstream gene distance | 365602 |
SNP risk allele | rs6054512-T |
SNPs | rs6054512 |
Merged | 0 |
SNP id current | 6054512 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.6391 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 0.0589 |
%95 Ci | [0.036-0.082] unit decrease |
Platform | Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | axial length measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005318 |
Study accession | GCST002115 |