SNP Detail For rs6052484
1.Mapping Information
Human SNP ID rs6052484
Human chromosome chr20
Human SNP position 4279963
Pig chromosome chr17
Pig SNP position 35807372
2.Annotation Information
PubMed ID26632684
JournalMedicine (Baltimore)
Linkwww.ncbi.nlm.nih.gov/pubmed/26632684
StudyGenome-wide Meta-analysis on the Sense of Smell Among US Older Adults.
Disease/TraitSense of smell
Initial sample6,252 European ancestry individuals
Replication sampleNA
Region20p13
Chromosome idchr20
Chromosome position4279963
Reported geneADRA1D
Mapped geneADRA1D - LOC105372510
Upstream gene id146
Downstream gene id105372510
SNP gene ids
Upstream gene distance30951
Downstream gene distance284378
SNP risk allelers6052484-A
SNPsrs6052484
Merged0
SNP id current6052484
Contextintergenic_variant
Intergenic1
Allele frequency0.26
P value0.000003
Pvalue mlog5.52287874528033
P value text(Ajusted for ApoE)
Or beta0.03
%95 Ci[0.01-0.05] ln(smell score+1) decrease
PlatformAffymetrix, Illumina [2543887] (imputed)
CNVN
Mapped traitsensory perception of smell
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0007608
Study accessionGCST003174
PubMed ID26632684
JournalMedicine (Baltimore)
Linkwww.ncbi.nlm.nih.gov/pubmed/26632684
StudyGenome-wide Meta-analysis on the Sense of Smell Among US Older Adults.
Disease/TraitSense of smell
Initial sample6,252 European ancestry individuals
Replication sampleNA
Region20p13
Chromosome idchr20
Chromosome position4279963
Reported geneADRA1D
Mapped geneADRA1D - LOC105372510
Upstream gene id146
Downstream gene id105372510
SNP gene ids
Upstream gene distance30951
Downstream gene distance284378
SNP risk allelers6052484-A
SNPsrs6052484
Merged0
SNP id current6052484
Contextintergenic_variant
Intergenic1
Allele frequency0.26
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.03
%95 Ci[0.01-0.05] ln(smell score+1) decrease
PlatformAffymetrix, Illumina [2543887] (imputed)
CNVN
Mapped traitsensory perception of smell
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0007608
Study accessionGCST003174