SNP Detail For rs6050469
1.Mapping Information
Human SNP ID rs6050469
Human chromosome chr20
Human SNP position 2594723
Pig chromosome chr17
Pig SNP position 37372524
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region20p13
Chromosome idchr20
Chromosome position2594723
Reported geneTMC2
Mapped geneTMC2
Upstream gene id
Downstream gene id
SNP gene ids117532
Upstream gene distance
Downstream gene distance
SNP risk allelers6050469-A
SNPsrs6050469
Merged0
SNP id current6050469
Contextintron_variant
Intergenic0
Allele frequency0.011
P value0.000002
Pvalue mlog5.69897000433601
P value text(Height change )
Or beta0.03
%95 Ci[NR] cm/y increase
PlatformIllumina [899892]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001762